[phenixbb] Phenix version 1.19.1 released

Aaron Oakley aarono at uow.edu.au
Sun Jan 24 17:51:25 PST 2021

FYI, if anyone using OS X finds that it refuses to run the point-and-click installer because the package is from an “unknown developer”, try running the following from a terminal:

xattr -dr com.apple.quarantine ~/Downloads/phenix-1.19.1-4122-mac-intel-osx-x86_64.pkg



On 25 Jan 2021, at 11:44 am, Paul Adams <pdadams at lbl.gov<mailto:pdadams at lbl.gov>> wrote:

The Phenix developers are pleased to announce that version 1.19.1 of Phenix is now available (build 1.19.1-4122). This fixes bugs in the 1.19 release. If you have previously downloaded 1.19 we recommend upgrading to 1.19.1. Binary installers for Linux, Mac OSX, and Windows platforms, and the source installer, are available at the download site:


Highlights for the 1.19.1 version of Phenix:

- phenix.real_space_refine
- Fix bug in restoring previous jobs
- Clarify NCS options

Please note that this new publication should be used to cite the use of Phenix:

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD: Acta Cryst. (2019). D75, 861-877. https://doi.org/10.1107/S2059798319011471<https://doi.org/10.1107/S2059798319011471>

Full documentation is available here:


There is a Phenix bulletin board:


Please consult the installer README file or online documentation for installation instructions.

Direct questions and problem reports to the bulletin board or:

help at phenix-online.org<mailto:help at phenix-online.org> and bugs at phenix-online.org<mailto:bugs at phenix-online.org>

Commercial users interested in obtaining access to Phenix should visit the
Phenix website for information about the Phenix Industrial Consortium.

The development of Phenix is principally funded by the National Institute of
General Medical Sciences (NIH) under grant P01-GM063210. We also acknowledge
the generous support of the members of the Phenix Industrial Consortium.

Paul Adams
Division Director, Molecular Biophysics & Integrated Bioimaging, LBL (http://biosciences.lbl.gov/divisions/mbib<http://biosciences.lbl.gov/divisions/mbib>)
Principal Investigator, Computational Crystallography Initiative, LBL (http://cci.lbl.gov<http://cci.lbl.gov>)
Vice President for Technology, the Joint BioEnergy Institute (http://www.jbei.org<http://www.jbei.org>)
Principal Investigator, ALS-ENABLE, Advanced Light Source (http://als-enable.lbl.gov<http://als-enable.lbl.gov>)
Division Deputy for Biosciences, Advanced Light Source (https://als.lbl.gov<https://als.lbl.gov>)
Laboratory Research Manager, ENIGMA Science Focus Area (http://enigma.lbl.gov<http://enigma.lbl.gov>)
Adjunct Professor, Department of Bioengineering, U.C. Berkeley (http://bioeng.berkeley.edu<http://bioeng.berkeley.edu>)
Adjunct Professor, Comparative Biochemistry, U.C. Berkeley (http://compbiochem.berkeley.edu<http://compbiochem.berkeley.edu>)

Building 33, Room 250
Building 978, Room 4126
Building 977, Room 180C
Tel: 1-510-486-4225

Lawrence Berkeley Laboratory
1 Cyclotron Road
BLDG 33R0345
Berkeley, CA 94720, USA.

Executive Assistant: Ashley Dawn [ ashleydawn at lbl.gov<mailto:ashleydawn at lbl.gov> ][ 1-510-486-5455 ]

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