[phenixbb] Bad geometry for DNA after Real-Space-Refine

Pavel Afonine pafonine at lbl.gov
Tue Jan 5 03:38:49 PST 2021

Hi Jobi,

with the proper refinement setup your current experience is not what's 
expected. So.. would you mind sharing with us all inputs and outputs so 
that we can investigate the issue and possibly come up with a solution? 
Needless to say -- If you choose to proceed please make sure you don't 
share all of this with the whole phenixbb!


On 1/5/21 01:09, Jobichen Chacko wrote:
> Dear BB,
> I am using phenix real space refinement for refining a cryo-EM model 
> of protein-DNA complex. However after refinement the structure of the 
> dna strands are twisted in a very bad geometry compared to the initial 
> input model.
> I am using version 1.8 for this project, also tried couple of other 
> versions as well, but the same problem happened.
> How to rectify this issue?
> Thank you.
> Jobi
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20210105/56fa274b/attachment.htm>

More information about the phenixbb mailing list