[phenixbb] Calculating the transformation matrix of density map alignment

Ahmad Khalifa underoath006 at gmail.com
Tue Dec 22 12:36:25 PST 2020

Thanks Pavel but it only takes mtz as input. I'm also only interested in
the transformation matrix to suppose one map onto the other in their
original frame of reference without superposing the maps per se.

On Sun, Dec 20, 2020, 2:19 PM Pavel Afonine <pafonine at lbl.gov> wrote:

> Hi Ahmad,
> phenix.match_maps is the tool to superpose maps and models.
> Pavel
> On Sun, Dec 20, 2020, 1:38 PM Ahmad Khalifa <underoath006 at gmail.com>
> wrote:
>> I have two density maps that I'm trying to align, or more precisely,
>> calculate the transformation matrix (rotation and translation) of their
>> alignment (moving one map and aligning it with the other map). Is there a
>> way to accomplish that using phenix or any other tool?
>> Thanks a lot and happy holidays.
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