[phenixbb] Copying mtz file

Pavel Afonine pafonine at lbl.gov
Tue Jun 25 00:22:37 PDT 2019

Hi Mirek,

based on your description this sounds like a bug or undesired feature at 
least! Could you please send me the files so that I can repeat your 
experience myself and see what's happening?

As a work-around you can re-generate flags as Tim suggested but chances 
are someone annoying like myself asks to prove no memory left from 
previous set and that is very hard to prove, and if not proven there 
will be a doubt! Although indeed, re-generating and running some 
refinement should be just fine, I agree!

Good luck!

On 6/24/19 21:09, Cygler, Miroslaw wrote:
> Hi Phenixers,
> I have copied mtz file to a new file with a lower resolution limit 
> using the "Reflection file editor” tool. I copied all arrays to the 
> output file. When I attempted to continue refinement with the new mtz 
> file, a message appears saying that there are no R-free flags in the 
> mtz file. Yet, the new file contains the R-free-flags column but the 
> values are inverted, 1 is changed to 0 and 0 is changed to 1. In the 
> output option dialog the box “Preserve original flag values” was checked.
> How to fix this?
> Thanks,
> Mirek
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