[phenixbb] Broken Phenix Coot integration after upgrade to v 1.16

Billy Poon BKPoon at lbl.gov
Wed Jul 17 11:02:40 PDT 2019

Hi Ahmad,

Is this validation for cryo-EM structures or from X-ray/neutron structures?
With cryo-EM maps there is some additional tracking of shifts and that
could be a cause of the problem. Is it possible to send us your input files
(off-list) so that we can investigate?

Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Wed, Jul 17, 2019 at 10:46 AM Ahmad Khalifa <underoath006 at gmail.com>

> Hello,
> After the update, when I open coot from validation with Phenix
> integration, and navigate to different atoms, clashes, etc, I get moved to
> an empty space outside of my map and model.
> What's going wrong here?
> Regards.
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