[phenixbb] Rosetta installation problems (II)

Billy Poon BKPoon at lbl.gov
Sat Oct 6 12:45:28 PDT 2018

Hi Luca,

Please try the latest version of Rosetta 3.10. There was a bug with macOS
10.13.6 that is fixed. I have tested Rosetta 3.10 on macOS 10.13.6 and
Xcode 10. The rosetta.run_tests step completes without using massive
amounts of memory. Also, if you use the GUI for phenix.rosetta_refine,
please use the latest nightly build, dev-3283. There was a bug where the
final R-values are not stored, which caused the GUI to crash.

Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Sat, Oct 6, 2018 at 11:49 AM Luca Jovine <Luca.Jovine at ki.se> wrote:

> Actually Simone, I just found that my problem has already been reported
> (I’m on 10.13.6):
> > Currently, there is an issue with using phenix.rosetta_refine and macOS
> High Sierra (10.13).
> > The rosetta.run_tests step in the installation instructions is
> generating large files and using large amounts of memory.
> so it’s apparently a Mac-specific issue and cannot also be the cause of
> your RuntimeError...
> Begin forwarded message:
> *From: *Luca Jovine <Luca.Jovine at ki.se>
> *Subject: **Re: [phenixbb] Rosetta installation problems*
> *Date: *6 October 2018 at 15:05:50 CEST
> *To: *"phenixbb at phenix-online.org" <phenixbb at phenix-online.org>
> I don’t think the two things are related, but - when running under Mac OS
> the refinement tests of Rosetta (3.9 = 2018.09.60072) with PHENIX 1.14-3260
> - I am also getting a (different) RuntimeError. The same test suite worked
> just fine with 1.13, so maybe there’s some general Rosetta compatibility
> issue with 1.14?
> Best, Luca
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