[phenixbb] refine error message

Oleg Sobolev osobolev at lbl.gov
Fri Sep 22 09:44:14 PDT 2017

Hi Jiemin,

You have atoms sitting on top of each other in your model. They are listed
just above the mentioned error message. Please check your model and get rid
of these atoms.

Best regards,
Oleg Sobolev.

On Fri, Sep 22, 2017 at 9:16 AM, Jiemin Zhao <zhao447 at purdue.edu> wrote:

> Hi,
> I got an error message when I try to refine a molecular replacement
> result. It says "number of nonbonded interaction distances<0.001:10. Please
> inspect the out put above(or in the log window) and correct the input model
> file."
> Could you help me with this problem? The error happens when I add Mg to
> pdb file.
> Thanks!
> Best regards,
> Jiemin
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