[phenixbb] refine error message

Pavel Afonine pafonine at lbl.gov
Mon Sep 18 13:05:53 PDT 2017

The error message says that PDB file contains unknown/nonstandard 
residues or ligands. This needs to be addressed before proceeding to 
refinement. If you indeed have some unknowns in the model then you need 
to provide a proper CIF file with restraints, or resolve the conflict 


On 9/18/17 17:57, Jiemin Zhao wrote:
> Hi,
> I got an error message when I try to refine a molecular replacement 
> result. It says Fatal problems interpreting model file: Number of 
> atoms with unknown nonbonding energy type symbols: 18 Please edit the 
> model file to resolve the problems and/or supply a CIF file with 
> matching restraint definitions, along with apply-cif-modification and 
> apply-cif-link parameter definitions if necessary.
> Could you help me with this problem?
> Thanks!

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20170918/77f65881/attachment.htm>

More information about the phenixbb mailing list