[phenixbb] sculptor modifications

Pavel Afonine pafonine at lbl.gov
Tue Jun 20 15:26:41 PDT 2017

Hi Emily,

simplest and quickest way would be to load both models into Pymol (or 
Coot) and color one read and the other one blue (or any other 
combination of colors of your preference!). That will give you a quick 
idea about changes in coordinates (note, it may change B factors too, as 
far as I know..).


phenix.pdb.hierarchy model.pdb

will give you counts of chains, residues, atoms, etc.


On 6/20/17 14:44, Emilia C. Arturo (Emily) wrote:
> Hello All,
> Is there a way to identify quickly the changes to a model that
> Sculptor has made?
> I am running the Phenix GUI to use Sculptor. I have read through the
> out-put log file, and understand (mostly) the sculpt protocol as it
> relates to the circumstances under which modifications to main chain
> or side chains are made, but it would be nice to see (in a list
> format, perhaps) what changes (if any...) were made.
> Regards,
> Emily.

More information about the phenixbb mailing list