[phenixbb] omit map problems

Dorothee Liebschner dcliebschner at lbl.gov
Tue Jan 31 09:23:11 PST 2017

Hi Thomas,

Which version of Phenix are you using?
Do you use the GUI or the command line?

Best wishes,


On Tue, Jan 31, 2017 at 8:51 AM, Thomas, Leonard M. <lmthomas at ou.edu> wrote:

> Okay this is a bit frustrating.  Trying to run a simple omit map.  Have a
> mtz file used for refinement and the out pdb file from refinement and every
> time I try to run the script it comes up with No PDB file defined error.
> Check both files and they appear fine.
> System is a Mac-Pro running Sierra.
> Thanks in advance.
> Leonard M. Thomas Ph.D.
> Macromolecular Crystallography Laboratory
> Oklahoma COBRE in Structural Biology
> Price Family Foundation Institute of Structural Biology
> Department of Chemistry and Biochemistry
> University of Oklahoma
> Stephenson Life Sciences Research Center
> 101 Stephenson Parkway
> Norman, OK 73019
> 405-325-1126
> lmthomas at ou.edu
> http://barlywine.chem.ou.edu
> http://structuralbiology.ou.edu
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