[phenixbb] omit map problems

Pavel Afonine pafonine at lbl.gov
Tue Jan 31 08:58:09 PST 2017

Could you please send relevant inputs (PDB, MTZ files?) and tell how you 
run the program (command line? GUI? Any non-default options?). I need to 
reproduce this problem in order to tell what's happening and suggest a 

On 1/31/17 08:51, Thomas, Leonard M. wrote:
> Okay this is a bit frustrating.  Trying to run a simple omit map.  Have a mtz file used for refinement and the out pdb file from refinement and every time I try to run the script it comes up with No PDB file defined error.  Check both files and they appear fine.
> System is a Mac-Pro running Sierra.
> Thanks in advance.
> Leonard M. Thomas Ph.D.
> Macromolecular Crystallography Laboratory
> Oklahoma COBRE in Structural Biology
> Price Family Foundation Institute of Structural Biology
> Department of Chemistry and Biochemistry
> University of Oklahoma
> Stephenson Life Sciences Research Center
> 101 Stephenson Parkway
> Norman, OK 73019
> 405-325-1126
> lmthomas at ou.edu
> http://barlywine.chem.ou.edu
> http://structuralbiology.ou.edu
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