[phenixbb] polder vs fem vs composite omit map vs maximum entropy

Dorothee Liebschner dcliebschner at lbl.gov
Thu Jan 19 18:10:19 PST 2017


I recommend polder maps for final stages of model building.
But they are computed quickly, so you can nonetheless try and see what
appears in the map.

Best wishes,


On Thu, Jan 19, 2017 at 2:04 PM, Murpholino Peligro <murpholinox at gmail.com>

> So I got a MR solution and maybe a dozen residues are not clearly defined
> (most of them in the surface) I used to compute the feature enhanced map
> but now I can see there are a lot of options in phenix->maps. Which one is
> better for me? (~130 residues, 1.5 A resolution, ~ 90% complete)
> Probably I should try them all, and compare them visually in coot with
> appropiate sigmas (taken from maps-> map comparison) (is that a good
> workflow? what you guys do?) ...but some of the maps take a lot of time to
> compute. So any help will be appreciated.
> Thanks
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