[phenixbb] Calculation of bond lengths, angles and torsion angle for large number of proteins

Pavel Afonine pafonine at lbl.gov
Wed Jan 11 22:40:06 PST 2017

Hi Ashraya,

> I would like to calculate all the bond lengths, bond angles and main 
> chain torsion angles for a large set of proteins, in PDB format. Could 
> you please let me know which module/command in phenix is suitable for 
> this task?

phenix.pdb_interpretation model.pdb write_geo_files=true

this will write a file with full list of bond/angle/plane/torsion/etc 
definitions for the model you provide.

Let me know if you have any questions.


More information about the phenixbb mailing list