[phenixbb] Phenix.real_space_refine

Pavel Afonine pafonine at lbl.gov
Fri Aug 11 08:46:43 PDT 2017

Hi Reza,

this is what I would expect it to do. Please let me know if it doesn't.

All the bets,

On 8/11/17 21:41, Reza Khayat wrote:
> I am refining a virus into an image reconstruction and have been 
> having issues using the NCS capability of 
> phenix.real_space_refine_1.12-2829. I think it may be my 
> misunderstanding of the manual. The virus has 60subunits and I am 
> feeding phenix a complete oligomer. I manually modify the first 
> subunit with coot (simple movements and such), define an NCS group 
> file where the first subunit is the reference and the other 59 are 
> selection, and feed these into phenix.real_space_refine. Does phenix 
> recapitulate my modifications of the first subunit into the remaining 
> 59 subunits to create an oligomer that contains all my modifications 
> before starting refinement?
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