[phenixbb] Phenix validate without map/mtz?

Billy Poon bkpoon at lbl.gov
Wed Sep 7 10:52:34 PDT 2016

Hi Oliver,

Yes, but if you provide a sequence file as well, the results do not contain
the sequence check. I'll take a look into why that is the case since that
check should not require a map.

Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Wed, Sep 7, 2016 at 10:49 AM, Pavel Afonine <pafonine at lbl.gov> wrote:

> Hi Oliver,
> Would it be possible to allow for running phenix validate without a
>> map/mtz? I dont always want the RSCC information, and it would be useful to
>> be able to get the geometry stats and sequence check without loading a map
>> (which in the case of EM maps can be very large and will presumably slow
>> things down a lot).
> Sure! Just load PDB file and leave reflections/map fields empty, then hit
> Run. That should just do model validation. Please let us know if anything
> doesn't work as expected.
> Pavel
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