[phenixbb] 5'-phosphate group CIF files

Nigel Moriarty nwmoriarty at lbl.gov
Mon Sep 21 09:44:33 PDT 2015


You have a choice. You can find (if it's there) an Chemical Component entry
that has the phosphate as part of the 3-letter code or you can find the
phosphate moiety as a separate residue. In Phenix 1.10, this will be
automatically linked and the LINK record written to the PDB output.

I can help if you desire.



Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Mon, Sep 21, 2015 at 9:34 AM, jens j birktoft <birktoft at nyu.edu> wrote:

> Hi everyone
> I need some suggestions for a CIF file for a 5'-phosphate moiety that is
> part of the nucleotide (CYT in this case) located at the start of a DNA
> strand (5' end) to be used in refinement in both PHENIX and COOT.
> All suggestions are appreciated.
> Cheers
> Jens
> --
> +++++++++++++++++++++++++++++++++++++++++++++++++++
> Jens J. Birktoft
> Structural DNA Nanotechnology
> New York University
> e-mail: birktoft at nyu.edu <jens.knold at gmail.com>; Phone: 212-749-5057
> very slow-mail: 350 Central Park West, Suite 9F, New York, NY 10025
> +++++++++++++++++++++++++++++++++++++++++++++++++++
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20150921/42156846/attachment.htm>

More information about the phenixbb mailing list