[phenixbb] Positive density at metal ions

Jan van Agthoven janccp4 at gmail.com
Thu Sep 3 09:11:43 PDT 2015

Hi everyone,

I work on a structure of about 3 A resolution. The structure is almost done
except for 3 metal ions which remain positive in the density. The metal is
clearly Mn (refinement works fine for an other very similar structure) and
has been set at full occupancy.

I tried to reset the B factor at lower values, which solves the problem for
2 metal ions but not the 3rd one. Is there anything else I can do?

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