[phenixbb] on the eff file

Tim Gruene tg at shelx.uni-ac.gwdg.de
Thu Mar 19 07:17:29 PDT 2015

Dear Smith,

you might want to use a tool like 'diff' or 'vimdiff' to spot the difference
between the two files.

The phenix syntax uses a star '*' to make the choice from a list of
possibilities, which you may have overlooked.


On Thu, Mar 19, 2015 at 10:09:24PM +0800, Smith Liu wrote:
> Dear All,
> Someone told me from the refine eff file, I can know what is my strategy for my refinement.
> I have run 2 refines with the same input files, For one refine, in the graphical interface I have checked xyz-coordinates, Real-space, Individual B-factors, Occupanies, Optimize X-ray/sterochemistry weight, Automaticaly orrect N/Q/H erros. For the other refine, I only checked XYZcoordinates, Real-space and Autonomously correct N/Q/H errors.
> I have checked the eff files from the 2 diffrent refines, but I cannot find any diffrence in the eff file.
> Thus will you please tell me how to find the diffrence in the 2 eff files? Or my strategies for each refine was recorded in the other files?
> I am looking forward to getting your reply.
> Smith

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Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen


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