[phenixbb] Covalent Linker

Courtney Daczkowski daczkocm at gmail.com
Mon Jul 27 08:29:19 PDT 2015

We are currently trying to build a model that has a nonstandard ligand that
is covalently bonded to two peptide chains.  We've placed the ligand and
linked it using Coot, but phenix.refine keeps removing the links.  We
generated the restraints using Elbow and wrote the .edits file using
phenix.link_edits, but phenix.refine is still removing the links.  We also
tried turning on automatic ligand linking in phenix.refine, but that didn't
work either.  Any advice?


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