[phenixbb] Problem with python while running Autobuild

Terwilliger, Thomas Charles terwilliger at lanl.gov
Thu Jul 9 08:09:01 PDT 2015

Hi Heng-Keat,

Wow, I have no idea about this one.  I'm sorry about that, as this may have taken a lot of time already. Could it be that you have a very large structure or high resolution and ran out of memory? (Still that should not give such an error).   Best bet:  install a recent nightly build and if you are lucky this will just go away (or not happen to occur)...

All the best,
Tom T

On Jul 9, 2015, at 8:57 AM, <Tam at em.uni-frankfurt.de>
 <Tam at em.uni-frankfurt.de> wrote:

> Dear all,
> I am currently facing a problem of python while running the Autobuild in Phenix.
> phenix.autobuild data=data1.mtz model=model.pdb seq_file=protein.dat rebuild_in_place=False \ composite_omit_type=iterative_build_omit
> then it stopped with error
> Error in `/home/mauricetam/software/phenix-1.9-1692/build/intel-linux-2.6-x86_64/base/bin/python2.7': free(): invalid next size (normal): 0x0000000003e100a0 ***
> I wonder what's wrong with it.
> Regards
> Heng-Keat
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org

More information about the phenixbb mailing list