[phenixbb] Rosetta MR mmcif file subprocess failed

Terwilliger, Thomas Charles terwilliger at lanl.gov
Mon Jan 12 09:39:10 PST 2015

Hi Christian,

I'm sorry, that sure is a pretty unhelpful error message!  That message can come up if a Phenix program tries to read a model file (pdb, mmcif) that doesn't contain anything in it.  Normally this should be caught and a real error message telling you what is wrong should be written.  In this case...no such luck.

Can you possibly off-list send me a full listing of directories (ls -lR MR_ROSETTA_xxx) and the full top-level log file and the full log file listed at the bottom of the top-level log file?  I'll see if I can figure out anything to check from that info.

-Tom T

On Jan 12, 2015, at 10:25 AM, Christian Roth wrote:

> Hi phenix developers,
> I started a Rosetta MR run with a model pdb and the target sequence file.
> It seems that the initial MR run went fine and the Rebuilding Job for the best MR solution started.
> A sequence alignment is shown in the log file and than the job stops suddenly with the message
> Sorry: mmcif file must contain at least one data block.
> I can't even find a mmcif file in one of the folders.
> Any idea what might went wrong.
> Thanks in advance for your help.
> Christian
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