[phenixbb] Coot failed to launch in Phenix after CCP4 update

Nathaniel Echols nechols at lbl.gov
Tue Jan 6 15:42:13 PST 2015

Check your settings in the Phenix preferences (Graphics section) - does
this have an explicit path to Coot set?  If so, you will probably need to
update it.  (In the future, it would probably be worth having Phenix
include ccp4 installations in the automatic detection, but that still won't
fix the problem if a specific path is set in the preferences.)

On Tue, Jan 6, 2015 at 3:38 PM, Shun Liu <sliu.xtal at gmail.com> wrote:

> Dear all,
> After I updated ccp4 to a new version (ccp4-6.5), I found that coot failed
> to launch in phenix.
> /Applications/PHENIX-1.9-1692/Contents/phenix-1.9-1692/build/mac-intel-osx-x86_64/../../phenix/phenix/command_line/start_coot.sh:
> line 37: /Applications/ccp4-6.4.0/coot.app/Contents/MacOS/coot: No such
> file or directory
> Apparently it requires ccp4-6.4.0, which has been deleted. I tried to
> modify find_coot_command.py in phenix, but it didn’t work. Can anybody give
> me some suggestions so that I can figure this problem out? Thanks!
> Best,
> Shun
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