[phenixbb] Rank-scaled map

Pavel Afonine pafonine at lbl.gov
Fri Aug 21 10:58:41 PDT 2015

Hi Jianghai,

it is available in cctbx and it is used as part of FEM, phenix.fem [*], 
and phenix.map_comparison [**] but there is no standalone 
user-accessible program that would take your map and turn it into 
rank-scaled one.

It is trivial to add so I'm adding it right now and chances are you will 
have it in tomorrow's nightly build.

All the best,

Acta Cryst. (2015). D71, 646-666.
FEM: feature-enhanced map
P. V. Afonine, N. W. Moriarty, M. Mustyakimov, O. V. Sobolev, T. C. 
Terwilliger, D. Turk, A. Urzhumtsev and P. D. Adams

Acta Cryst. (2014). D70, 2593-2606.
Metrics for comparison of crystallographic maps
A. Urzhumtsev, P. V. Afonine, V. Y. Lunin, T. C. Terwilliger and P. D. Adams

On 8/21/15 10:41, Jianghai Zhu wrote:
> Hi,
> I know PHENIX can calculate a rank-scaled density map.  Could anyone 
> inform me which program in PHENIX actually does this?
> Thanks.
> Best,
> ​ ​--Jianghai

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