[phenixbb] Automatic linking of glycans doesn't work when hydrogens are added by ReadySet

Tristan Croll tristan.croll at qut.edu.au
Mon Apr 27 01:52:00 PDT 2015


I'm currently using the dev 2000 version of Phenix, and noticed an issue with the automatic linking of N-linked (and presumably O-linked) glycans. If you feed a glycosylated structure sans hydrogens to Phenix and allow ReadySet to add hydrogens prior to refinement, it adds hydrogens as if the glycans are unlinked. Then, the automatic linking script rejects them due to valence issues.


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