[phenixbb] extra density for phosphorylated Thr

Ursula Schulze-Gahmen uschulze-gahmen at lbl.gov
Tue Apr 21 12:14:52 PDT 2015

I have a structure with a phosphorylated Thr (TPO). As far as I can see,
phenix recognizes the TPO residue, but the electron density maps have a
large positive density around the side chain of this residue. Any
suggestion what is wrong? Do I need a special definition file for the TPO?


Ursula Schulze-Gahmen, Ph.D.
Project Scientist
UC Berkeley, QB3
360 Stanley Hall #3220
Berkeley, CA 94720-3220
(510) 643 9491
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