[phenixbb] Link NGA and THR

Pavel Afonine pafonine at lbl.gov
Mon Apr 13 14:26:56 PDT 2015


could you please send PDB file before and after refinement? Did you do 
anything special to tell phenix.refine to link GalNAc to Thr ? There are 
several tools to do this so I'd like to know what you have tried and 
what did not work..


On 4/13/15 12:13 PM, Cory Brooks wrote:
> Hello!
> I am refining a structure with O-link glycosylation (GalNAc linked to
> Thr). Phenix seems to remove the link during refinement. Can anyone
> suggest a solution that will maintain the bond during refinement?
> Regards,
> Cory
> Cory Brooks,Ph.D.
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