[phenixbb] pdbtools: how to set the occupancy for an atom selection?

Smith Liu smith_liu123 at 163.com
Mon Apr 13 07:00:25 PDT 2015

By the way, will you please let me know from which step we have the b-factors in the PDB files? Do the b-factors change with the progression of phenix refinement?

At 2015-04-13 21:46:20, "Alejandro Virrueta" <alejandro.virrueta at yale.edu> wrote:


I was wondering if someone could show me a way to set the occupancy of a specific set of atoms to 0 using phenix.pdbtools.

I noticed here that there is no option under modify => occupancies to do an 'atom_selection'. Any help would be appreciated.

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