[phenixbb] Autobuild error

Terwilliger, Thomas Charles terwilliger at lanl.gov
Wed Apr 8 06:02:35 PDT 2015

Hi Lau,

It doesn't sound normal to me to have a missing directory while AutoBuild is running ...  I wonder if you are able to look and see what directories are actually present?  If you go to


and then look in TEMP0

is there an AutoBuild_run_1_ directory? Run 2?  ...

Also have a look at the overall log file in


Does the end of that file have any clues?

all the best,
Tom T

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Lau Sze Yi (SIgN) [lau_sze_yi at immunol.a-star.edu.sg]
Sent: Tuesday, April 07, 2015 1:06 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] Autobuild error


I did an Autobuild run. The Status panel indicated that the run is finished. In the Model building panel the status of run# 5 still says running (See attached screenshot). Is this normal? And when I click on run #4 to Open in Coot, I get an error message indicating that the directory could not be found (see attachment). What is wrong and how can I fix this?

I am using version phenix-1.9-1692 on Mac.

Sze Yi

Research Fellow
Singapore Immunology Network (SigN)
8A Biomedical Grove, #03-06 Immunos,
Singapore 138648
DID: +65 6407 0640
Fax:  +65 6407 0640

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