[phenixbb] refinement for non-standard DNA base

John Cheong john123cheong at gmail.com
Thu Sep 11 09:02:05 PDT 2014


I have 5-fluoro-Uracil in my DNA:protein complex.
I modeled 5-F-dU into the map, ran eLBOW for geometry file and did
After the refinement, 5-F-dU is not connected to the neighboring
nucleotides and the phosphate oxygens are rotated to wrong positions.

Can anyone teach me how to refine with non-standard DNA base ?

Any help or advice would be appreciated.

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