[phenixbb] OMIT map

Terwilliger, Thomas Charles terwilliger at lanl.gov
Tue Sep 2 08:02:32 PDT 2014

Hi Abhishek,

Autobuild is trying to tell you that if you supply an input map it cannot use that input map in the generation of an omit map.  The reason it cannot use the input map is that it needs to generate an unbiased map and if it uses your input map it won't be unbiased.  To fix this, just don't supply an input map.   I hope that helps!

All the best,
Tom T

On Sep 2, 2014, at 8:16 AM, abhishek jamwal wrote:

> Dear phenixbb members,
> I  want to build a  SA-OMIT map for a ligand present in xtal structure of a protein. I am using "AutoBuild-create omit map" module of PHENIX ver. 1.8.4-1496 (graphical interface) for this purpose.
> However, when I run the program after adding requisite input files, it gives an error: " The map file parameter is not supported for omit map calculation"
> Q: What is this "file parameter" and way to fix this error/parameter ?
> waiting for answers
> many thanks in advance
> Abhishek Jamwal
> Structural Biology Group
> ICGEB, New Delhi
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> phenixbb at phenix-online.org
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