[phenixbb] Calculate average B-factor?

Pavel Afonine pafonine at lbl.gov
Sat Oct 4 13:56:05 PDT 2014

Hi Chen,


phenix.b_factor_statistics model.pdb
phenix.pdbtools model.pdb model_stat=true

It will take case of TLS etc appropriately.


On 10/4/14 1:03 PM, Chen Zhao wrote:
> Dear all,
> I am just wondering whether there is a command line tool in phenix 
> that calculates the average B-factor of a PDB file? Can it deal with 
> the ANISOU records (from TLS refinement or not) properly? I looked 
> into previous posts but the --show-adp-statistics option in 
> phenix.pdbtools seems to be no longer available in the version 
> (1.9-1678) I installed.
> Thank you so much,
> Chen
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> phenixbb at phenix-online.org
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