[phenixbb] Calculate average B-factor?

Ed Pozharski ccp4pozharski at gmail.com
Sat Oct 4 13:32:18 PDT 2014

grep "^ATOM  " filename.pdb | cut -c 61-66 | awk '{s+=$1;} END {print s/NR;}'

"Nobody likes a show off, Private"


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<div>-------- Original message --------</div><div>From: Chen Zhao <c.zhao at yale.edu> </div><div>Date:10/04/2014  4:03 PM  (GMT-05:00) </div><div>To: PHENIX user mailing list <phenixbb at phenix-online.org> </div><div>Subject: [phenixbb] Calculate average B-factor? </div><div>
</div>Dear all,

I am just wondering whether there is a command line tool in phenix that calculates the average B-factor of a PDB file? Can it deal with the ANISOU records (from TLS refinement or not) properly? I looked into previous posts but the  --show-adp-statistics option in phenix.pdbtools seems to be no longer available in the version (1.9-1678) I installed.

Thank you so much,
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