[phenixbb] Use of NCS in Autosol

Terwilliger, Thomas Charles terwilliger at lanl.gov
Tue Jul 29 13:30:35 PDT 2014

Hi Nick,
Autosol looks for NCS in the heavy-atom sites, in the density map, and in each model that it builds, and if it finds it, then it will use it in density modification.
I hope that helps!
All the best,
Tom T

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Nick Huang [huangnian at gmail.com]
Sent: Tuesday, July 29, 2014 10:01 AM
To: PHENIX user mailing list
Subject: [phenixbb] Use of NCS in Autosol

Dear All,
Does autosol use NCS averaging in its density modification?
I checked the log file for an Autosol run. It seemed Autosol used NCS in heavy atom refinement but not in the density modification procedure. But I might be wrong.
If this is the case, is there a way to include NCS in autosol pipeline or do I just have to run density averaging afterward?


Nick Huang

Hauptman-Woodward Institute
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