[phenixbb] real space refinement
pafonine at lbl.gov
Mon Jul 28 06:34:35 PDT 2014
All right let me know if anything performs better than
phenix.real_space_refine and I will do my best to catch up -;)
P.S.: phenix.real_space_refine is still under active development.
On 7/28/14, 9:31 AM, George Devaniranjan wrote:
> Hi Pavel,
> Thank you, I have also tried COOT but I wanted to know whether anyone
> had used (with success ) other similar tools.
> Why? Mostly curiosity :) but also to do a comparison I guess of
> Thank you, I will check some of the others you have mentioned.
> On Mon, Jul 28, 2014 at 9:29 AM, Pavel Afonine <pafonine at lbl.gov
> <mailto:pafonine at lbl.gov>> wrote:
> Hi George,
> as far as I know phenix.real_space_refine is the only user-exposed
> real-space refinement utility in Phenix. You can think of Tom's
> morphing as a kind of real-space refinement (phenix.morph_model).
> Also, you can think of mmtbx.lockit as a simplest version of
> Outside Phenix I would say Coot, Chimera, HermiteFit, ... there
> are many more and Google is your friend to find them.
> Just curious: why?
> On 7/28/14, 9:19 AM, George Devaniranjan wrote:
>> I know this is going to sound blasphemous in phenix (my apology
>> particularly to Pavel) but is there other s/w that does similar
>> things to phenix.real_space_refine ?
>> I used that already (works very well) but was wondering if there
>> was anything similar out there to do a comparison.
>> Thank you,
>> phenixbb mailing list
>> phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
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