[phenixbb] table_one

Nathaniel Echols nechols at lbl.gov
Sun Aug 24 09:44:01 PDT 2014

On Sat, Aug 23, 2014 at 11:54 AM, Andreas Förster <docandreas at gmail.com>

> I encounter the following error when running phenix.table_one from the
> command line (RHEL 6.3 64-bit, phenix-dev-1769):
> andreas at csbstereo in blah: phenix.table_one
> Traceback (most recent call last):
>   File "/csb/soft/Linux64/share/phenix-dev-1769/build/intel-
> linux-2.6-x86_64/../../phenix/phenix/command_line/table_one.py", line 6,
> in <module>
>     phenix.automation.table_one.run(sys.argv[1:],
> auto_extract_labels=True,
> AttributeError: 'module' object has no attribute 'run'
> Aunt Google insists that this is "a circular import issue".
> What do the developers say?


I rewrote the program a few months ago to be an extension of MolProbity,
but I forgot to remove the old launcher.  It'll be fixed in the next build.
 You can patch your installation by doing this:

cd /csb/soft/Linux64/share/phenix-dev-1769/
rm -rf phenix/phenix/command_line/table_one.py
cd build/intel-linux-2.6-x86_64

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