[phenixbb] Phenix composite omit map
c.zhao at yale.edu
Mon Apr 21 10:05:40 PDT 2014
Thank you Tom,
I understand what "command not found" mean, but I already sourced
"phenix_env" in my bashrc. "phenix.list" works, also I have already run
"phenix.autosol", "phenix.autobuild", "phenix.refine" without any problems.
Thank you so much again!
On Mon, Apr 21, 2014 at 1:01 PM, Terwilliger, Thomas C <terwilliger at lanl.gov
> Hi Chen,
> "command not found" usually means the shell cannot find a particular
> command. It often can be fixed by sourcing the right setup commands.
> If you type:
> does it also say "command not found"? If so, you just need to source
> the phenix version you want. When you install it phenix lists where this
> directory is...If you are on a mac you will say something like this:
> source /Applications/PHENIX-1.8.3-1479/Contents/phenix-1.8.3-1479/phenix_env
> and you can put that in your .cshrc file too (if you are using csh).
> Let me know if that doesn't do it!
> All the best,
> Tom T
> On Apr 21, 2014, at 10:53 AM, Chen Zhao wrote:
> Dear all,
> Hello! I am now running into a simple technical problem but I just cannot
> figure it out. I am trying to create a composite omit map by phenix, but
> when I typed in the command phenix.composite_omit_map XXX.eff based on
> the instructions on
> I got the error message "command not found". Could anybody help me out?
> Thank you so much in advance!
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