[phenixbb] zero B-factors

Nathaniel Echols nechols at lbl.gov
Mon Nov 25 09:35:36 PST 2013

On Mon, Nov 25, 2013 at 8:21 AM, Engin Özkan <eozkan at stanford.edu> wrote:

> I was looking at this histogram when I wrote that email :) but that
> histogram is not clickable and does not report residue names (unlike the
> list just below it). I always look at the histogram (and its usually
> Poisson-like shape is intriguing). It was just a suggestion to add the
> other end of the distribution to the list of outlier residues reported by
> Phenix.

Good point - I will add this.  The next version of the validation in Phenix
(phenix.molprobity, not yet available in the GUI) will already flag waters
with suspiciously low B-factors, although the threshold for suspicion is
arbitrarily defined right now.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20131125/e32e40ce/attachment.htm>

More information about the phenixbb mailing list