[phenixbb] Fitting ligand using coot

Kendall Nettles knettles at scripps.edu
Sat Mar 30 13:03:55 PDT 2013

rotate translate it into roughly the correct position then use real space refinement. 

On Mar 30, 2013, at 3:58 PM, <bsubedi at btk.fi> wrote:

> Hi all,
> I tried to fit the ligand using the coot -> calculate-> other modeling tools->
> Find ligands. I have imported cif to coot and also opened the pdb file of my
> ligand. However, coot do not identify the ligand and asks to adjust r.m.s.d. I
> can see the density for my ligand. Could anyone suggest me what could be the
> problem or if I am missing anything here.
> Best regards.
> Bishwa
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