[phenixbb] MR_rosetta and disulphides

Terwilliger, Thomas C terwilliger at lanl.gov
Sat Mar 16 13:18:12 PDT 2013

Hi Morten,

I'm sorry to get your hopes up with my documentation promising this feature. I checked, and the Rosetta part of this did not get included in Rosetta 3.4.  It should be in Rosetta 3.5, due out in "a couple weeks."

All the best,
Tom T

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Morten Groftehauge [mortengroftehauge.work at gmail.com]
Sent: Friday, March 15, 2013 11:58 AM
To: PHENIX user mailing list
Subject: [phenixbb] MR_rosetta and disulphides

Hi guys,

Phenix version 1323
Rosetta version 3.4

I try to run
phenix.mr_rosetta rosetta_command="-MR::disulf 129:411 228:281 279-615" mr_rosetta_228.eff

but I get the following error in rebuild.log
ERROR: Option matching -MR:disulf not found in command line top-level context

I lifted the rosetta_command directly from the Version Documentation.
Any clues as to why this doesn't work?

Morten K Grøftehauge, PhD
Pohl Group
Durham University
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