[phenixbb] map woes from refine

Pavel Afonine pafonine at lbl.gov
Fri Mar 8 11:47:29 PST 2013


anyone who experienced this problem please try the latest build:


I was able to reproduce the problem using Mischa's data (many thanks 
Mischa !) and fix it.
Please let me know should you see any problem.


On 3/6/13 12:13 PM, Machius, Mischa Christian wrote:
> Y'all,
> Recently, I've run into an issue with the maps from refine. All during the refinement cycles, the autoupdated maps in the associated coot window look great as refinement progresses. However, the final maps look horrible; completely chopped up. It's not a matter of contouring levels; it's essentially unrecognizable, and phenix acknowledges that by stating very low correlation coefficients at the end of the log file.
> I have downloaded the latest builds in an attempt to address B-value issues that were recently discussed and that I am (still) struggling with. The map issue happens with all of them. Is it possible that there is some crossfire from different versions, or any other reason?
> Any help appreciated.
> Cheers,
> MM
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