[phenixbb] map woes from refine

Pavel Afonine pafonine at lbl.gov
Wed Mar 6 13:04:46 PST 2013

Hi Mischa,

thanks for sending the files. I can reproduce the problem and I'm 
working on the fix. I will post an update once the problem is fixed.


On 3/6/13 12:13 PM, Machius, Mischa Christian wrote:
> Y'all,
> Recently, I've run into an issue with the maps from refine. All during the refinement cycles, the autoupdated maps in the associated coot window look great as refinement progresses. However, the final maps look horrible; completely chopped up. It's not a matter of contouring levels; it's essentially unrecognizable, and phenix acknowledges that by stating very low correlation coefficients at the end of the log file.
> I have downloaded the latest builds in an attempt to address B-value issues that were recently discussed and that I am (still) struggling with. The map issue happens with all of them. Is it possible that there is some crossfire from different versions, or any other reason?
> Any help appreciated.
> Cheers,
> MM
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