[phenixbb] map woes from refine

Pavel Afonine pafonine at lbl.gov
Wed Mar 6 12:24:20 PST 2013

Hi Mischa,

an industry user reported the same problem a few days ago but he could 
not send the data. So I really hope you can send me the files (data and 
model) so I can reproduce and fix this problem - this would be a huge 
help. There must be an obscure bug somewhere introduced in recent (after 
release) versions, but I can't figure out what it is.


On 3/6/13 12:13 PM, Machius, Mischa Christian wrote:
> Y'all,
> Recently, I've run into an issue with the maps from refine. All during the refinement cycles, the autoupdated maps in the associated coot window look great as refinement progresses. However, the final maps look horrible; completely chopped up. It's not a matter of contouring levels; it's essentially unrecognizable, and phenix acknowledges that by stating very low correlation coefficients at the end of the log file.
> I have downloaded the latest builds in an attempt to address B-value issues that were recently discussed and that I am (still) struggling with. The map issue happens with all of them. Is it possible that there is some crossfire from different versions, or any other reason?
> Any help appreciated.
> Cheers,
> MM
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