[phenixbb] Format problem of restraint file

Pavel Afonine pafonine at lbl.gov
Sun Jun 30 14:04:44 PDT 2013

Hi Xiang,

libtbx.phil ss12.eff


Syntax error: no matching "}" for "{" at file "ss12.eff", line 769

You need to have "}" after line 1284. Perhaps the same for next 
nucleic_acids block, etc.. You need to make sure all { and } match.

I quickly edited your file so it at least passes libtbx.phil (attached).


On 6/30/13 1:51 PM, Xiang Li wrote:
> Hi everyone,
> I generated the basepairing restraint file by command phenix.secondary_structure_restraints MR.1.pdb > ss.eff . Then I opened the ss.eff file with gedit and edit the basepairing information. However, after I finished editing and saved the file, the refine program can not read the file. The error is "This application does not support the file type for ss.eff (format:txt)". I have attached a copy of the eff file. Do I have a way to solve the problem?
> Thanks for your help!
> Sincerely,
> Xiang
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb

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