[phenixbb] give-up-quick Phaser in Rosetta
mortengroftehauge.work at gmail.com
Tue Jul 9 09:41:34 PDT 2013
I was wondering if there was any way of getting Rosetta to give up easily
and move on to another search model?
Say I have 20 or more equally awful search models. I think there's a
possibility that one of them will knock it out of the park (i.e. TFZ > 8).
But even if I have Phaser set to fast search I will end up with an
exhaustive search because the search models are so bad.
fast_search_mode= True Run phaser with selection_criteria_rot_value and
then if no obvious solution, repeat with cutoff
lowered by search_down_percent
search_down_percent= 25 Used if fast_search_mode=True. Run phaser with
selection_criteria_rot_value and then if no obvious
solution, repeat with cutoff lowered by
If I set search_down_percent to 75 does this mean that Phaser will give up
easily and move on to the next model? Is this a terrible strategy
I am of course aware that search_down_percent is much more likely to give
me the right solution for a given model but in this case there are just so
many possible search models.
Morten K Grøftehauge, PhD
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