[phenixbb] where is brute rotation output

Ursula Schulze-Gahmen uschulze-gahmen at lbl.gov
Wed Jan 30 15:18:19 PST 2013

OK. So in my case there was no file created. Is this because there was no
good solution or why?


On Wed, Jan 30, 2013 at 3:09 PM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Wed, Jan 30, 2013 at 2:43 PM, Ursula Schulze-Gahmen
> <uschulze-gahmen at lbl.gov> wrote:
> > Has anybody experience with the output from the brute rotation function.
> I
> > ran this and it finished without complaints, but there are no output
> files
> > ***.rlist or ***.sol in the directory. I cannot figure out why and how to
> > continue now with the translation function. From the log file it seemed
> that
> > there were peaks that could have been written out.
> In Phenix, all of this info (regardless of what mode you ran Phaser
> in) is stored internally in a result object buried in the tracking
> directory; there are no additional output files because they're not
> needed here.  If you want to continue to the translation function, you
> simply select the rotation function job from the "Use previous result"
> menu, set the mode to translation function, and it will extract the
> angles from there.
> Since this isn't at all obvious (and not at all like CCP4i), I will
> see if I can add a note to the results tab to make it clear how to
> proceed.
> -Nat
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Ursula Schulze-Gahmen, Ph.D.
Assistant Researcher
UC Berkeley, QB3
356 Stanley Hall #3220
Berkeley, CA 94720-3220
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