[phenixbb] phenix.refine command line
kip at pharm.stonybrook.edu
Tue Jan 29 07:54:29 PST 2013
You need to use .profile not .bashrc on a Mac
As a test run the source command yourself directly and then try running phenix.refine etc
Hope that helps
On Jan 29, 2013, at 10:16 AM, Simon Kolstoe <s.kolstoe at ucl.ac.uk> wrote:
> On 29 Jan 2013, at 14:55, R.D. Oeffner wrote:
>> Hi Simon,
>> Just to be clear; did you actually exectute the alias command before attempting to run phenix.refine?
>> On Jan 29 2013, Simon Kolstoe wrote:
>>> Hi guys,
>>> I'm just trying to install phenix on a students new macbook pro running OS10.8.2, and want to get phenix.refine working on the command line. I've put in:
>>> alias setphenix="source /Applications/PHENIX-1.8.1-1168/Contents/phenix-1.8.1-1168/phenix_env.sh"
>>> in the .bashrc which seems to execute OK (and already pointed the .bash_profile to .bashrc) however whenever I then type phenix.refine I get command not found. As this is the same setup that I have running on my own machine I am a bit confused as to what is happening!
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>>> phenixbb at phenix-online.org
>> Robert Oeffner, Ph.D.
>> Research Associate, The Read Group
>> Department of Haematology, University of Cambridge
>> Cambridge Institute of Medical Research
>> Wellcome Trust / MRC Building, Hills Road, Cambridge, CB2 0XY
>> www-structmed.cimr.cam.ac.uk, tel:01223763234, mobile:07712 887162
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