[phenixbb] phenix.refine command line

R.D. Oeffner rdo20 at cam.ac.uk
Tue Jan 29 06:55:39 PST 2013

Hi Simon,

Just to be clear; did you actually exectute the alias command before attempting to run phenix.refine?


On Jan 29 2013, Simon Kolstoe wrote:

>Hi guys,
> I'm just trying to install phenix on a students new macbook pro running OS10.8.2, and want to get phenix.refine 
> working on the command line. I've put in:
>alias setphenix="source /Applications/PHENIX-1.8.1-1168/Contents/phenix-1.8.1-1168/phenix_env.sh"
> in the .bashrc which seems to execute OK (and already pointed the .bash_profile to .bashrc) however whenever I then 
> type phenix.refine I get command not found. As this is the same setup that I have running on my own machine I am a 
> bit confused as to what is happening!
>phenixbb mailing list
>phenixbb at phenix-online.org

Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology, University of Cambridge
Cambridge Institute of Medical Research
Wellcome Trust / MRC Building, Hills Road, Cambridge, CB2 0XY
www-structmed.cimr.cam.ac.uk, tel:01223763234, mobile:07712 887162

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