[phenixbb] Problem rebuilding ligand structure

Bishwa Subedi bsubedi at btk.fi
Fri Jan 11 08:16:11 PST 2013

Hi Nat,

Yes, I did that.

Best regards,


On Jan 11, 2013, at 6:08 PM, Nathaniel Echols wrote:

> On Fri, Jan 11, 2013 at 2:07 AM,  <bsubedi at btk.fi> wrote:
>> I used readyset to obtain the restrains for refinement using .pdb file, even
>> though my refinement works, when i try to run real build refine in coot I get
>> this error message:
>> Failed to match (to the dictionary) the following model atom names:
>> HB3
>> “O6” “C10” “C11” “C12” “O7” “C13” “O5” “C8” “C9” ......
>> That would cause exploding atoms, so the refinement didn't start.
>> Could someone help me with fixing this problem.
> Did you load the CIF from ready_set into Coot first?  (File menu ->
> Import CIF dictionary)
> -Nat
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