[phenixbb] Problem rebuilding ligand structure

Nathaniel Echols nechols at lbl.gov
Fri Jan 11 08:08:40 PST 2013

On Fri, Jan 11, 2013 at 2:07 AM,  <bsubedi at btk.fi> wrote:
> I used readyset to obtain the restrains for refinement using .pdb file, even
> though my refinement works, when i try to run real build refine in coot I get
> this error message:
> Failed to match (to the dictionary) the following model atom names:
> HB3
> “O6” “C10” “C11” “C12” “O7” “C13” “O5” “C8” “C9” ......
> That would cause exploding atoms, so the refinement didn't start.
> Could someone help me with fixing this problem.

Did you load the CIF from ready_set into Coot first?  (File menu ->
Import CIF dictionary)


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