[phenixbb] Refining anomalous groups

Brennan Bonnet Brennan.Bonnet at lightsource.ca
Wed Jan 9 13:02:02 PST 2013

Hi Nat,

It looks like the crisis has been averted.  One of my colleagues suggested that the problem could be due to running Phenix on our data processing server and when I tried to run it locally instead, the problem cleared up.  Go figure. :p

Thanks for your help regardless! Let me know if you would still like me to send any files in case it's something that you should know about.

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] On Behalf Of Nathaniel Echols [nechols at lbl.gov]
Sent: Wednesday, January 09, 2013 2:57 PM
To: PHENIX user mailing list
Subject: Re: [phenixbb] Refining anomalous groups

On Wed, Jan 9, 2013 at 12:51 PM, Brennan Bonnet
<Brennan.Bonnet at lightsource.ca> wrote:
> I apologize, Phenix does not attempt to open Coot at this point but it does attempt to open some sort of viewing program which causes Phenix to crash.
> I am running Fedora 17 and Phenix 1.8.1-1168
> The only error message given is: Segmentation fault (core dumped)

Yuck.  Just to make sure it's not a bug in our code, could you please
send me the input PDB file (I don't need data)?  I will try to
reproduce the problem tomorrow.  You might also want to consider
trying a different installer; which one did you download?  We do not
have a Fedora 17 build yet, but maybe we should.

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